SC FRAMEWORK

Contents:

  • Changelog
  • RNA notebooks
    • 01 - Assembling or loading anndata object
    • 02 - QC and filtering
    • 03 - Batch effect correction and comparisons
    • 04 - Embedding and clustering
    • 0A - Marker gene computation and analysis
    • 0B - Receptor-Ligand Analysis
    • 0C - Velocity Analysis
  • ATAC notebooks
  • General notebooks
  • sctoolbox API reference
SC FRAMEWORK
  • RNA notebooks
  • View page source

RNA notebooks

List of example notebooks:

  • 01 - Assembling or loading anndata object
  • 02 - QC and filtering
  • 03 - Batch effect correction and comparisons
  • 04 - Embedding and clustering
  • 0A - Marker gene computation and analysis
  • 0B - Receptor-Ligand Analysis
  • 0C - Velocity Analysis
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